Commandline Usage

• AlignSets.py
  • AlignSets.py muscle
  • AlignSets.py offset
  • AlignSets.py table
• AssemblePairs.py
  • AssemblePairs.py align
  • AssemblePairs.py join
  • AssemblePairs.py reference
  • AssemblePairs.py sequential
• BuildConsensus.py
• ClusterSets.py
  • ClusterSets.py all
  • ClusterSets.py barcode
  • ClusterSets.py set
• CollapseSeq.py
• ConvertHeaders.py
  • ConvertHeaders.py 454
  • ConvertHeaders.py genbank
  • ConvertHeaders.py generic
  • ConvertHeaders.py illumina
  • ConvertHeaders.py imgt
  • ConvertHeaders.py migec
  • ConvertHeaders.py sra
• EstimateError.py
  • EstimateError.py barcode
  • EstimateError.py set
• FilterSeq.py
  • FilterSeq.py length
  • FilterSeq.py maskqual
  • FilterSeq.py missing
  • FilterSeq.py quality
  • FilterSeq.py repeats
  • FilterSeq.py trimqual
• MaskPrimers.py
  • MaskPrimers.py align
  • MaskPrimers.py extract
  • MaskPrimers.py score
• PairSeq.py
• ParseHeaders.py
  • ParseHeaders.py add
  • ParseHeaders.py collapse
  • ParseHeaders.py copy
  • ParseHeaders.py delete
  • ParseHeaders.py expand
  • ParseHeaders.py merge
  • ParseHeaders.py rename
  • ParseHeaders.py table
• ParseLog.py
• SplitSeq.py
  • SplitSeq.py count
  • SplitSeq.py group
  • SplitSeq.py sample
  • SplitSeq.py samplepair
  • SplitSeq.py select
  • SplitSeq.py sort
• UnifyHeaders
  • UnifyHeaders consensus
  • UnifyHeaders delete