.. presto documentation master file

.. include:: ../README.rst

.. toctree::
    :hidden:

    Immcantation Portal <http://immcantation.readthedocs.io>

.. toctree::
    :maxdepth: 1
    :caption: Getting Started

    overview
    install
    news

.. toctree::
    :maxdepth: 1
    :caption: Usage Documentation

    usage
    api

.. toctree::
    :maxdepth: 1
    :caption: Example Workflows

    workflows/Jiang2013_Workflow
    workflows/Greiff2014_Workflow
    workflows/Stern2014_Workflow
    workflows/VanderHeiden2017_Workflow

.. toctree::
    :maxdepth: 1
    :caption: Example Tasks

    examples/import
    examples/annotations
    examples/filter
    examples/primers
    examples/assembly
    examples/umi

.. toctree::
    :maxdepth: 1
    :caption: About

    info

Indices
--------------------------------------------------------------------------------

* :ref:`genindex`
* :ref:`modindex`