presto
0.6.2
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Roche 454 BCR mRNA with Multiplexed Samples
Illumina MiSeq 2x250 BCR mRNA
UMI Barcoded Illumina MiSeq 2x250 BCR mRNA
UMI Barcoded Illumina MiSeq 325+275 paired-end 5’RACE BCR mRNA
Example Tasks
Importing Data
Manipulating Annotations
Filtering and Subsetting
Isotype and Primer Annotations
Fixing Assembly Problems
Fixing UMI Problems
Usage Documentation
Commandline Usage
AlignSets
AssemblePairs
BuildConsensus
ClusterSets
CollapseSeq
ConvertHeaders
EstimateError
FilterSeq
MaskPrimers
PairSeq
ParseHeaders
ParseLog
SplitSeq
UnifyHeaders
API
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Commandline Usage
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Commandline Usage
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AlignSets
AlignSets muscle
AlignSets offset
AlignSets table
AssemblePairs
AssemblePairs align
AssemblePairs join
AssemblePairs reference
AssemblePairs sequential
BuildConsensus
ClusterSets
ClusterSets all
ClusterSets barcode
ClusterSets set
CollapseSeq
ConvertHeaders
ConvertHeaders 454
ConvertHeaders genbank
ConvertHeaders generic
ConvertHeaders illumina
ConvertHeaders imgt
ConvertHeaders migec
ConvertHeaders sra
EstimateError
EstimateError barcode
EstimateError set
FilterSeq
FilterSeq length
FilterSeq maskqual
FilterSeq missing
FilterSeq quality
FilterSeq repeats
FilterSeq trimqual
MaskPrimers
MaskPrimers align
MaskPrimers extract
MaskPrimers score
PairSeq
ParseHeaders
ParseHeaders add
ParseHeaders collapse
ParseHeaders copy
ParseHeaders delete
ParseHeaders expand
ParseHeaders merge
ParseHeaders rename
ParseHeaders table
ParseLog
SplitSeq
SplitSeq count
SplitSeq group
SplitSeq sample
SplitSeq samplepair
SplitSeq select
SplitSeq sort
UnifyHeaders
UnifyHeaders consensus
UnifyHeaders delete
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v: 0.6.2
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